To create awareness of the worldwide spread CORONA virus.
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Updated
May 12, 2021 - Python
To create awareness of the worldwide spread CORONA virus.
A simple program that uses parallel processing to detect deletions in fasta files relative to a reference genome.
Independent bioinformatics project on the origin of SARS-CoV-2 utilizing the Levenshtein distance algorithm. Uses real-world genome data of various animal coronaviruses as points of comparison.
Manuscript, source codes and data sets on estimating Singapore’s lower-bound SARS-CoV-2 Infection Trend In 2020.
WashU Virus Genome Browser Documentation
Python port of "Estimated Airborne Decay of SARS-CoV-2 (virus that causes COVID-19)" by the DHS
Big Data analysis with PySpark. Multiple SARS-CoV-2 and COVID-19 medical datasets are being used.
A utility for creating and exploring variants of the SARS-CoV-2 Spike protein sequences.
Pipeline for analyses of multiple pathogens, like SARS-CoV-2 with positivity rate analyses
This program was written during the COVID-19 pandemic, as a way to demonstrate that manual "contact tracing" can be spoofed.
Flask web application for pattern matching in a genome sequence
Visualisation of SARS-CoV-2 genomic epidemiology
INSACOG DataHub is a part of INSACOG that is used to store and analyze SARS-CoV-2 genomic data. This repository is developed and maintained at National Institute of Biomedical Genomics. This is backend repository that analyzes all the sequences uploaded.
RADx-rad pipeline for metagenomic data and analysis of SARS-CoV-2 from wastewater
A Snakemake pipeline to find SARS-CoV-2 clusters in a reference phylogeny
Cluster Investigation & Virus Epidemiology Tool
Animate COVID stats using matplotlib and numpy (remember flattening the curve?)
Matrix bot tracking SARS-COV-2 statistics.
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