To create awareness of the worldwide spread CORONA virus.
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Updated
May 12, 2021 - Python
To create awareness of the worldwide spread CORONA virus.
A toolkit for monitoring ONT MinION sequencing, followed by data analysis, for viral genomes amplified with tiled amplicon sequencing.
A simple program that uses parallel processing to detect deletions in fasta files relative to a reference genome.
Independent bioinformatics project on the origin of SARS-CoV-2 utilizing the Levenshtein distance algorithm. Uses real-world genome data of various animal coronaviruses as points of comparison.
Visualisation of the UK COVID-19 cases breakdown
Python port of "Estimated Airborne Decay of SARS-CoV-2 (virus that causes COVID-19)" by the DHS
Code for analyzing GISAID Sars-CoV-2 sequences for mutations in sequences from the B.1.1.7 or any other lineage.
A utility for creating and exploring variants of the SARS-CoV-2 Spike protein sequences.
Pipeline for analyses of multiple pathogens, like SARS-CoV-2 with positivity rate analyses
E((X-E(X))^(sqrt(2)+sqrt(-2))) so called circular variance is used to find out stable region of the body temperature measurement process through fore head etc.
A Python library and command-line scripts for working with SARS-CoV-2 sequences
SARS-CoV-2 infection source data from Swiss cantons
Flask web application for pattern matching in a genome sequence
Visualisation of SARS-CoV-2 genomic epidemiology
Convert covid-19 amino acid sequence into charge sequence, and calculates complex correlations among viruses.
INSACOG DataHub is a part of INSACOG that is used to store and analyze SARS-CoV-2 genomic data. This repository is developed and maintained at National Institute of Biomedical Genomics. This is backend repository that analyzes all the sequences uploaded.
RADx-rad pipeline for metagenomic data and analysis of SARS-CoV-2 from wastewater
Snakemake workflow to upload Sars-Cov-2 reads to ENA
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