Tool for inferring global ancestry proportions in admixed samples using deep learning
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Updated
Sep 19, 2019 - Python
Tool for inferring global ancestry proportions in admixed samples using deep learning
A Genetic Algorithm project for solving The Traveling Salesman Problem "TSP"using Roulette Wheel Selection, Ordered Crossover (OX) and Mutation Swap Mutation
Analysis pipeline associated with master's thesis on the population structure, demographic history and distribution of fitness effects of birches in Scandinavia.
Test for selective neutrality using relative likelihood.
Artificial Intelligence (AI) University Project 2023
Population analysis of DNA methylation
HeliantHOME: a public and centralized database Home of a comprehensive collection of phenotypes for different Sunflower species
Barton and Zeng (2018) - Pipeline for testing anavar with simulated data.
Custom scripts for creating plots in Circos
X chromosome regional variation by population
DeepLOF is a deep learning model for predicting essential genes.
Provides functionality to model the genetics of biological populations and obtain population genetic statistics
Interactive visualization of population genetics data for ~10,000 modern and ancient individuals.
Codes i wrote for the scientific paper "Predicting genotype environmental range from genome–environment associations"
An altruism-based simulation
Compute the Tajima's-D, Pi-Estimator or Watterson-Estimator for multiple sequences.
Scripts for performing population genetics analysis and associated visualizations from data produced by CLC Genomics Workbench v 9.5
This is my honors project in Computer Science 2020. It is a simple Python Dash web interface that analyses CYP enzymes variability and their drug interactions using VCF files
STRUCTURE and ROLLOFF reimplementations for CS 4775 (Computational Genetics and Genomics)
A tool to visualize the haplotype pattern and various information in excel.
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