pairwise-alignment
Here are 24 public repositories matching this topic...
GPU implementation of the Wavefront Alignment Algorithm for global, gap-affine, pairwise sequence alginment
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Jan 9, 2024 - C
Fast pairwise sequence alignment using SeqAn, in Python.
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Mar 23, 2019 - C++
convert alignment bam to pairwise alignment or multiple sequence alignment (msa) at genome specific region
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May 21, 2024 - Crystal
Basic types and functions for pairwise alignment.
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Mar 22, 2024 - Rust
This project includes Needleman-Wunsch and Smith-Waterman algorithms and their afine gap variations (Gotoh) written to work with Cython, PyPy and Numba. Numba JIT shows greater performance. For Best performance use gotoh_jit.py to get only the best score and use gotoh_jit_traceback to get the best alignment
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Sep 22, 2021 - Python
This repository houses the Genomic Sequence Comparison Code (GSCC), a collection of Python scripts designed for genomic sequence analysis. Whether you're comparing suspected sequences with known reference sequences or delving into bioinformatics, GSCC provides versatile tools for pairwise alignment. Feel free to explore!
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Mar 19, 2024 - Python
Biosequence analysis library
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Jul 20, 2022 - Python
An R script that calculates a similarity matrix for a list of protein sequences with the aid of Bleakley-Yamanishi Normalized Smith-Waterman Similarity Score.
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Dec 23, 2021 - R
SAM Alignment Reconstructor
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Jul 26, 2018 - Python
Generate random sequence pairs to test pairwise aligners
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May 7, 2023 - Rust
Applications that compute pairwise alignments of two biological sequences
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Oct 23, 2021 - Java
Pipeline to make pairwise comparisons of matched fasta sequences.
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Nov 28, 2022 - Python
If protein sequence NR2F6 is very similar between humans and mice, then mice that have SNP rs11856995 might show photic sneeze reflex (PSR) phenotype.
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Dec 8, 2021 - Jupyter Notebook
Pairwise alignment algorithm testing page
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Dec 13, 2023 - TypeScript
Sequence Alignment Tool
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Aug 3, 2023 - JavaScript
Projects developed under the Bioinformatics college chair during the 2020/2021 school year
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Jul 3, 2022 - Python
Pairwise genome alignment
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May 28, 2024 - Nextflow
An R script to measure the potential influence of different parameters that could have affected the speed of pairwise sequence alignment, using the functions of the Biostrings package.
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Dec 22, 2021 - R
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