Bioinformatics library in Kotlin

Renderers and renderer extensions for JupyterLab

Frequently used commands in bioinformatics

fakit: a simple program for fasta file manipulation

A modern compressor for genomic files (FASTQ, SAM/BAM/CRAM, VCF, FASTA, GFF/GTF/GVF, 23andMe...), up to 5x better than gzip and faster too

This notebook does the analysis of a protein sequence dataset in FASTA format. It addresses challenges in data import, alignment, embedding, and classification using bioinformatics tools and machine learning techniques. The solution provides a systematic approach to extract insights from structured data, crucial for bioinformatics research.

Library-free horizontal transfer detection, with a focus on transposable element invasions

The modern C++ library for sequence analysis. Contains version 3 of the library and API docs.

GET_HOMOLOGUES: a versatile software package for pan-genome analysis

GA4GH Refget specifications docs

Various components for building RNA sequencing applications in Perl

Tools for querying and analysis of genomic data

Goalign is a set of command line tools and an API to manipulate multiple sequence alignments. It is implemented in Go language.

Clone with Python! Data structures for double stranded DNA & simulation of homologous recombination, Gibson assembly, cut & paste cloning.

This project is created by the Hao Lab at the Chemistry Department in George Washington University, Washington, D.C..(Publication pending) This project aims to provide contaminant protein FASTA and spectral libraries that can be universally applied to DDA and DIA proteomics and freely accessible for the proteomics community.

🚀 seqfu - Sequece Fastx Utilities

Versatile open-source tool for microbiome analysis

A Java API for high-throughput sequencing data (HTS) formats.

A Go package for designing DNA.

A DNA Sequence Alignment/Map (SAM) library for Clojure