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LSeu-Open committed Nov 24, 2022
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Expand Up @@ -100,6 +100,7 @@ List of software, tools, pipelines, plugins etc. for image analysis related to b
- [NeuroAnatomy Toolbox](https://github.com/natverse/nat) - NeuroAnatomy Toolbox: An R package for the (3D) visualisation and analysis of biological image data, especially tracings of single neurons.
- [Neuroglancer](https://github.com/google/neuroglancer/) - Neuroglancer is a WebGL-based viewer for volumetric data.
- [NeuronJ](https://github.com/ImageScience/NeuronJ) - NeuronJ: An ImageJ Plugin for Neurite Tracing and Analysis.
- [Panda](https://www.nitrc.org/projects/panda/) - PANDA (Pipeline for Analyzing braiN Diffusion imAges) is a matlab toolbox for pipeline processing of diffusion MRI images.
- [PyTorch Connectomics](https://github.com/zudi-lin/pytorch_connectomics) - PyTorch Connectomics is a deep learning framework for automatic and semi-automatic annotation of connectomics datasets, powered by PyTorch.
- [RivuletPy](https://github.com/RivuletStudio/rivuletpy) - Robust 3D Neuron Tracing / General 3D tree structure extraction in Python for 3D images powered by the Rivulet2 algorithm.
- [SliceMap](https://github.com/mbarbie1/SliceMap) - SliceMap: An Algorithm for Automated Brain Region Annotation, implemented as FIJI(ImageJ) plugin.
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