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@bioinf-mcb

Bioinformatics at Małopolska Centre of Biotechnology

Popular repositories

  1. gisaid-scrapper gisaid-scrapper Public

    Scrapping tool for GISAID data regarding SARS-CoV-2

    Python 41 16

  2. Metagenomic-DeepFRI Metagenomic-DeepFRI Public

    Pipeline for searching and aligning contact maps for proteins, then running DeepFri's GCN.

    Python 29 6

  3. metagenome_assembly metagenome_assembly Public

    WDL Workflow for metagenome assembly

    Python 9 3

  4. qiime2-api-tutorials qiime2-api-tutorials Public

    QIIME 2 tutorials using the Artifact API

    Jupyter Notebook 5 6

  5. MANIAC MANIAC Public

    Computation of average nucleotide identity with the use of MMseqs2

    Python 5

  6. BERT-torchserve-quickstart BERT-torchserve-quickstart Public

    Serving BERT embeddings via Torchserve

    Python 4 3

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