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Pull requests list

ci.yaml: Pin pathogen-repo-ci
#1115 by joverlee521 was merged Jun 12, 2024 Loading…
1
Group by week for 1m/2m Asia builds
#1104 by victorlin was merged May 2, 2024 Loading…
@victorlin
2
Designate clades 24A (JN.1) and 24B (JN.1.11.1)
#1103 by corneliusroemer was merged Apr 5, 2024 Loading…
10 of 12 tasks
2
Generate subsampling config with a script revisit sometime Useful to address but no bandwidth at the moment
#1102 by victorlin was closed May 23, 2024 • Draft
1 of 5 tasks
@victorlin
4
dev: Remove python-version input to setup-nextstrain-cli action
#1099 by tsibley was merged Feb 16, 2024 Loading…
2
Remove RDB-level related rules/files
#1097 by joverlee521 was merged Feb 1, 2024 Loading…
1 of 4 tasks
2
Bump actions/checkout from 3 to 4 dependencies Pull requests that update a dependency file
#1096 by dependabot bot was merged Feb 5, 2024 Loading…
Bump actions/setup-python from 3 to 5 dependencies Pull requests that update a dependency file
#1095 by dependabot bot was merged Feb 5, 2024 Loading…
Fix RBD level coloring and filter
#1094 by joverlee521 was merged Jan 31, 2024 Loading…
2 of 5 tasks
5
Update tutorial docs
#1091 by victorlin was merged Jan 26, 2024 Loading…
1 of 5 tasks
@victorlin
1
Version nextalign binary for transition
#1090 by victorlin was closed Jan 17, 2024 Loading…
4 tasks
@victorlin
1
Version nextclade binary for transition, i.e. nextclade -> nextclade2
#1089 by corneliusroemer was merged Jan 10, 2024 Loading…
1 task done
docs: Use conda instead of mamba
#1088 by victorlin was merged Dec 9, 2023 Loading…
@victorlin
Designate clades 23G (XBB.1.5.70), 23H (HK.3), 23I (BA.2.86)
#1087 by corneliusroemer was merged Nov 30, 2023 Loading…
12 tasks done
7
ci: Bump dependency versions
#1086 by corneliusroemer was merged Oct 3, 2023 Loading…
Add new emerging lineages
#1085 by corneliusroemer was merged Oct 1, 2023 Loading…
1 task done
Fix snakemake rule existence checks
#1084 by jameshadfield was merged Sep 20, 2023 Loading…
2
Specify Read the Docs build OS
#1083 by huddlej was merged Sep 18, 2023 Loading…
1 task done
Check for empty user-defined subsampling scheme
#1082 by huddlej was merged Sep 19, 2023 Loading…
2 tasks done
Remove AUGUR_RECURSION_LIMIT
#1080 by joverlee521 was merged Aug 11, 2023 Loading…
4 tasks
Designate 4 new clades: CH.1.1 -> 23C, XBB.1.9 -> 23D, XBB.2.3 -> 23E, EG.5.1 (XBB.1.9.2.5.1) -> 23F
#1078 by corneliusroemer was merged Aug 9, 2023 Loading…
7 tasks done
1
Add new lineages to emerging_lineages.tsv and color_ordering.tsv
#1077 by corneliusroemer was merged Jul 31, 2023 Loading…
6 tasks
Add 100k open samples
#1075 by jameshadfield was merged Jun 30, 2023 Loading…
6
Update subsampling
#1074 by trvrb was merged Jun 17, 2023 Loading…
1 task
6
Update Open data Source & Licensing
#1072 by emmahodcroft was closed Jun 8, 2023 Loading…
16
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