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Issues list

Pipeline execution automation and distribution via web gui enhancement New feature or request
#143 opened Apr 22, 2021 by alethomas
🚀 1
Multiple Outbreak Links enhancement New feature or request
#353 opened Dec 2, 2021 by thomasbtf
3 tasks
@alethomas
NbConvertApp: Notebook JSON is invalid: Additional properties are not allowed ('id' was unexpected) bug Something isn't working
#78 opened Feb 25, 2021 by thomasbtf
Merge kraken and krona rules with inheritance enhancement New feature or request
#208 opened Aug 27, 2021 by thomasbtf
Refactor plot-call-error enhancement New feature or request
#228 opened Sep 1, 2021 by thomasbtf
Clean up plot-primer-clipping.py enhancement New feature or request paper
#230 opened Sep 1, 2021 by thomasbtf
@alethomas
Kallisto plots are not working on the production server bug Something isn't working
#238 opened Sep 8, 2021 by thomasbtf
Github Actions Caching todo
#243 opened Sep 14, 2021 by thomasbtf
Try out unit tests enhancement New feature or request
#244 opened Sep 14, 2021 by thomasbtf
Standardisation of colour schemes used in plots enhancement New feature or request paper
#312 opened Oct 28, 2021 by thomasbtf
think about regex instead of splitting todo
#316 opened Nov 3, 2021 by github-actions bot
Fix update_sample_sheet.py bug Something isn't working
#340 opened Nov 28, 2021 by thomasbtf
Jupyter permission error bug Something isn't working
#39 opened Feb 15, 2021 by thomasbtf
7
Multi-lineage Indication enhancement New feature or request
#351 opened Dec 2, 2021 by thomasbtf
1 task
Docstrings in common.smk enhancement New feature or request
#357 opened Dec 2, 2021 by thomasbtf
Tooltip in Overview Table bug Something isn't working
#358 opened Dec 2, 2021 by thomasbtf
Publish Container to Quay.io bug Something isn't working paper
#359 opened Dec 2, 2021 by thomasbtf
@thomasbtf
Kallisto Consensus Sequences enhancement New feature or request
#371 opened Dec 2, 2021 by thomasbtf
Complete Documentation enhancement New feature or request paper
#376 opened Dec 6, 2021 by thomasbtf
1 of 26 tasks
@thomasbtf @alethomas
@AKBrueggemann @lenakinzel
1
Add flag if covid is not detected enhancement New feature or request
#384 opened Dec 8, 2021 by alethomas
@AKBrueggemann
Remove found species from overview table enhancement New feature or request
#415 opened Dec 17, 2021 by alethomas
Add CoVarPlot enhancement New feature or request
#430 opened Dec 22, 2021 by thomasbtf
Implement automatic primer resources for ARTIC v3 + v4 enhancement New feature or request
#432 opened Dec 23, 2021 by alethomas
Add rules for generating report only with qc measures enhancement New feature or request
#606 opened Oct 25, 2023 by alethomas
Add plot of of found mutations enhancement New feature or request high priority paper
#345 opened Nov 30, 2021 by thomasbtf
1
@alethomas
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