Published May 7, 2024
| Version 3.4.2
Software
Open
nf-core/sarek: Sarek 3.4.2 - Sájtáristjåhkkå
Creators
- Maxime U Garcia1
- Friederike Hanssen2
- Anders Sune Pedersen3
- Gisela Gabernet
- WackerO
- SusiJo
- Adam Talbot1
- Chela James4
- nf-core bot
- Bekir Ergüner5
- Alexander Peltzer6
- nickhsmith
- José Fernández Navarro
- Júlia Mir Pedrol
- Grant Neilson7
- Edmund Miller8
- Simon Pearce
- Nicolás Schcolnicov9
- David Mas-Ponte10
- Malin Larsson11
- Abhinav Sharma12
- Robert Syme13
- Lucia Conde14
- Lasse Folkersen15
- Francesco Lescai16
- Adrian Lärkeryd17
- Matilda Åslin18
- Raquel Manzano19
- JohannesKersting
- Venkat Malladi
- 1. @seqeralabs
- 2. QBiC
- 3. Dep. of Molecular Medicine (MOMA)
- 4. Fondazione Human Technopole
- 5. Exscientia
- 6. Boehringer Ingelheim
- 7. Cosyne Therapeutics
- 8. @Functional-Genomics-Lab
- 9. ZS Associates
- 10. UW
- 11. SciLifeLab
- 12. @biosharp-dotnet
- 13. Seqera Labs
- 14. University College London
- 15. NucleusGenomics | mynucleus.com
- 16. University of Pavia
- 17. ICR
- 18. Uppsala University, SciLifeLab Genomics, NGI Uppsala
- 19. Cancer Research UK
Description
What's Changed
- 3.5.0dev - back to dev by @maxulysse in https://github.com/nf-core/sarek/pull/1477
- feat(nf-prov): pin nf-prov to 1.2.2 by @maxulysse in https://github.com/nf-core/sarek/pull/1482
- Improve cloud testing matrix strategy by @adamrtalbot in https://github.com/nf-core/sarek/pull/1378
- Add new citation by @FriederikeHanssen in https://github.com/nf-core/sarek/pull/1485
- Fixing call to GATK4_HAPLOTYPECALLER by @asp8200 in https://github.com/nf-core/sarek/pull/1488
- Update sentieon modules to 202308.02 by @asp8200 in https://github.com/nf-core/sarek/pull/1487
- add test data in igenomes by @maxulysse in https://github.com/nf-core/sarek/pull/1489
- Update mosdepth by @asp8200 in https://github.com/nf-core/sarek/pull/1490
- feat(wave): add wave profile by @maxulysse in https://github.com/nf-core/sarek/pull/1493
- handle multiple DOIs by @maxulysse in https://github.com/nf-core/sarek/pull/1496
- Fix: Cloud Storage objects are immutable on GCP by @maxulysse in https://github.com/nf-core/sarek/pull/1494
- feat(release): prepare release 3.4.2 by @maxulysse in https://github.com/nf-core/sarek/pull/1498
- fix(tests): remove md5sum for all mosdepth tests + update dependency for these tests by @maxulysse in https://github.com/nf-core/sarek/pull/1499
- fix: remove string none option from params.ascat_genome by @kenibrewer in https://github.com/nf-core/sarek/pull/1501
- Adding Simon and Ken by @maxulysse in https://github.com/nf-core/sarek/pull/1509
- Update CITATIONS.md with fgbio by @nh13 in https://github.com/nf-core/sarek/pull/1505
- fix(TYPO): index_alignement should be index_alignment by @nh13 in https://github.com/nf-core/sarek/pull/1506
- Release 3.4.2 by @maxulysse in https://github.com/nf-core/sarek/pull/1484
New Contributors
- @kenibrewer made their first contribution in https://github.com/nf-core/sarek/pull/1501
- @nh13 made their first contribution in https://github.com/nf-core/sarek/pull/1505
Full Changelog: https://github.com/nf-core/sarek/compare/3.4.1...3.4.2
https://github.com/nf-core/sarek/blob/master/CHANGELOG.md#342---s%C3%A1jt%C3%A1ristj%C3%A5hkk%C3%A5
Files
nf-core/sarek-3.4.2.zip
Files
(13.3 MB)
| Name | Size | Download all |
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md5:e9a4f518b6bc40045a80fe4cc1bc372c
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Additional details
Related works
- Is supplement to
- Software: https://github.com/nf-core/sarek/tree/3.4.2 (URL)